lmpy.data_wrangling.matrix.accepted_name_wrangler

Module containing occurrence data wranglers for modifying point data.

Module Contents

Classes

AcceptedNameMatrixWrangler

Constructor for AcceptedNameMatrixModifier class.
class lmpy.data_wrangling.matrix.accepted_name_wrangler.AcceptedNameMatrixWrangler(name_map=None, name_resolver=None, taxon_axis=1, purge_failures=True, **params)[source]

Bases: lmpy.data_wrangling.matrix.base._MatrixDataWrangler, lmpy.data_wrangling.common.accepted_name_wrangler._AcceptedNameWrangler

Constructor for AcceptedNameMatrixModifier class.

Parameters

  • name_map (dict) – A map of original name to accepted name.

  • name_resolver (str or Method) – If provided, use this method for getting new accepted names. If set to ‘gbif’, use GBIF name resolution.

  • taxon_axis (int) – The axis with taxon headers.

  • purge_failures (bool) – Should failures be purged from the matrix.

  • **params (dict) – Keyword parameters to pass to _MatrixDataWrangler.

name = AcceptedNameMatrixWrangler[source]
version = 1.0[source]
wrangle_matrix(self, matrix)[source]

Wrangle a matrix.

Parameters

matrix (Matrix) – A matrix to wrangle.

Returns

The matrix with accepted taxon names.

Return type

Matrix