Welcome to Lifemapper lmpy’s documentation!
The Lifemapper lmpy repository contains common Lifemapper objects that can be useful to the community for either developing new tools for the BiotaPhy Python Repository or for independent projects that want to use some of our performance and feature improvements.
At the time of this first release, the tools are primarily for lightly wrapped Dendropy trees, extended NumPy arrays that include header information, and presence-absence matrix (PAM) randomizations that are used to create null models.
Contents:
- Installation
- lmpy Installation
- Alternative: Install and run with a Docker Container
- Tutorials
- Build Shapegrid
- Data Cleaning
- Layer Encoder
- Matrix Objects
- Metacommunity Phylogenetics Analysis (MCPA)
- Occurrence Filters
- PAM Randomization and Null Models
- PAM Statistics
- Running Statistics
- TreeWrapper Objects
- About
- References
- API Reference